Pseudomonas putida S16, PPS_5151
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0015969 | guanosine tetraphosphate metabolic process |
Inferred from Sequence Model
Term mapped from: InterPro:SM00954
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ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:1.10.3210.10 | Hypothetical protein af1432 | - | - | 3 | 190 | 3.3E-74 |
| Pfam | PF13328 | HD domain | - | - | 26 | 175 | 3.7E-52 |
| SMART | SM00471 | hd_13 | IPR003607 | HD/PDEase domain | 41 | 153 | 1.9E-8 |
| SMART | SM00954 | RelA_SpoT_2 | IPR007685 | RelA/SpoT | 235 | 345 | 3.3E-63 |
| Gene3D | G3DSA:3.30.70.260 | - | - | - | 623 | 702 | 1.5E-13 |
| CDD | cd01668 | TGS_RSH | IPR033655 | RelA/SpoT, TGS domain | 390 | 447 | 3.93241E-29 |
| Coils | Coil | Coil | - | - | 700 | 702 | - |
| FunFam | G3DSA:3.30.460.10:FF:000001 | GTP pyrophosphokinase RelA | - | - | 192 | 325 | 4.8E-54 |
| Gene3D | G3DSA:3.10.20.30 | - | IPR012675 | Beta-grasp domain superfamily | 382 | 455 | 2.9E-29 |
| Pfam | PF02824 | TGS domain | IPR004095 | TGS | 389 | 447 | 6.5E-18 |
| FunFam | G3DSA:3.30.70.260:FF:000027 | (P)ppGpp synthetase II | - | - | 623 | 702 | 1.8E-50 |
| CDD | cd05399 | NT_Rel-Spo_like | IPR007685 | RelA/SpoT | 215 | 331 | 1.40602E-38 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | IPR043519 | Nucleotidyltransferase superfamily | 192 | 325 | 3.4E-44 |
| CDD | cd00077 | HDc | IPR003607 | HD/PDEase domain | 43 | 166 | 5.55363E-6 |
| FunFam | G3DSA:1.10.3210.10:FF:000001 | GTP pyrophosphokinase RelA | - | - | 3 | 191 | 6.1E-88 |
| SUPERFAMILY | SSF109604 | HD-domain/PDEase-like | - | - | 4 | 191 | 9.73E-72 |
| PANTHER | PTHR21262 | GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE | - | - | 5 | 699 | 0.0 |
| FunFam | G3DSA:3.10.20.30:FF:000002 | GTP pyrophosphokinase (RelA/SpoT) | - | - | 381 | 455 | 2.5E-34 |
| Pfam | PF19296 | RelA/SpoT, AH and RIS domains | IPR045600 | RelA/SpoT, AH and RIS domains | 460 | 545 | 1.7E-9 |
| Pfam | PF13291 | ACT domain | IPR002912 | ACT domain | 623 | 699 | 2.0E-14 |
| CDD | cd04876 | ACT_RelA-SpoT | - | - | 629 | 699 | 3.27608E-17 |
| NCBIfam | TIGR00691 | JCVI: RelA/SpoT family protein | IPR004811 | RelA/SpoT family | 26 | 698 | 0.0 |
| SUPERFAMILY | SSF55021 | ACT-like | IPR045865 | ACT-like domain | 625 | 700 | 2.24E-7 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | IPR043519 | Nucleotidyltransferase superfamily | 181 | 393 | 6.38E-60 |
| SUPERFAMILY | SSF81271 | TGS-like | IPR012676 | TGS-like | 376 | 448 | 1.09E-21 |
| Pfam | PF04607 | Region found in RelA / SpoT proteins | IPR007685 | RelA/SpoT | 235 | 345 | 4.4E-36 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.