Pseudomonas putida BIRD-1, PPUBIRD1_1253 (ruvA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd14332
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009378 four-way junction helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd14332
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009379 Holliday junction helicase complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd14332
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003678 DNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00084
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd14332
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppb03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00031 Holliday junction branch migration complex subunit RuvA [ruvA]. IPR000085 Holliday junction branch migration complex subunit RuvA 1 203 32.527561
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 73 92 0.72
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 1 63 7.42E-20
Gene3D G3DSA:1.10.150.20 - - - 67 141 6.5E-29
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 108 127 0.022
SUPERFAMILY SSF46929 DNA helicase RuvA subunit, C-terminal domain IPR036267 RuvA, C-terminal domain superfamily 156 202 2.62E-9
Pfam PF01330 RuvA N terminal domain IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial 1 62 4.1E-24
CDD cd14332 UBA_RuvA_C IPR011114 Holliday junction DNA helicase RuvA, C-terminal 157 200 4.78561E-12
Gene3D G3DSA:1.10.8.10 - - - 156 203 4.5E-18
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 1 66 1.5E-27
Pfam PF14520 Helix-hairpin-helix domain - - 72 130 2.6E-17
Coils Coil Coil - - 118 138 -
NCBIfam TIGR00084 JCVI: Holliday junction branch migration protein RuvA IPR000085 Holliday junction branch migration complex subunit RuvA 1 203 1.5E-62
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 66 137 2.2E-22
Pfam PF07499 RuvA, C-terminal domain IPR011114 Holliday junction DNA helicase RuvA, C-terminal 158 202 3.8E-16

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.