Pseudomonas putida BIRD-1, PPUBIRD1_3987 (recA)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003697	single-stranded DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:cd00983	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006281	DNA repair	ISM Inferred from Sequence Model Term mapped from: InterPro:cd00983	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016887	ATPase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00382	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:cd00983	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	ppb03440	Homologous recombination	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	35	332	2.4E-126
CDD	cd00983	RecA	IPR013765	DNA recombination and repair protein RecA	35	269	0.0
PRINTS	PR00142	RecA protein signature	IPR013765	DNA recombination and repair protein RecA	127	156	3.7E-84
PRINTS	PR00142	RecA protein signature	IPR013765	DNA recombination and repair protein RecA	93	122	3.7E-84
NCBIfam	TIGR02012	JCVI: recombinase RecA	IPR013765	DNA recombination and repair protein RecA	4	324	0.0
SMART	SM00382	AAA_5	IPR003593	AAA+ ATPase domain	57	228	8.3E-11
PANTHER	PTHR45900	RECA	IPR013765	DNA recombination and repair protein RecA	4	335	0.0
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	4	267	1.93E-65
PRINTS	PR00142	RecA protein signature	IPR013765	DNA recombination and repair protein RecA	165	194	3.7E-84
PRINTS	PR00142	RecA protein signature	IPR013765	DNA recombination and repair protein RecA	297	314	3.7E-84
Hamap	MF_00268	Protein RecA [recA].	IPR013765	DNA recombination and repair protein RecA	5	329	50.895031
FunFam	G3DSA:3.40.50.300:FF:000087	Recombinase RecA	-	-	33	330	0.0
Pfam	PF00154	recA bacterial DNA recombination protein	IPR013765	DNA recombination and repair protein RecA	7	267	0.0
PRINTS	PR00142	RecA protein signature	IPR013765	DNA recombination and repair protein RecA	210	238	3.7E-84
SUPERFAMILY	SSF54752	RecA protein, C-terminal domain	IPR023400	DNA recombination and repair protein RecA, C-terminal	269	325	7.59E-20
PRINTS	PR00142	RecA protein signature	IPR013765	DNA recombination and repair protein RecA	243	272	3.7E-84

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.