Pseudomonas putida BIRD-1, PPUBIRD1_4744 (fda)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008270 zinc ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01116
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004332 fructose-bisphosphate aldolase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01521
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006096 glycolytic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01521
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016832 aldehyde-lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01116
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0005975 carbohydrate metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01116
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppb01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc glycolysis IV (plant cytosol) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG ppb00051 Fructose and mannose metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc glycolysis II (from fructose 6-phosphate) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG ppb01230 Biosynthesis of amino acids 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc formaldehyde assimilation II (assimilatory RuMP Cycle) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG ppb01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb01200 Carbon metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc 1,3-propanediol biosynthesis (engineered) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG ppb01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb00680 Methane metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb00010 Glycolysis / Gluconeogenesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb00030 Pentose phosphate pathway 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PIRSF PIRSF001359 F_bP_aldolase_II IPR000771 Fructose-bisphosphate aldolase, class-II 1 324 5.8E-81
NCBIfam TIGR00167 JCVI: ketose-bisphosphate aldolase IPR000771 Fructose-bisphosphate aldolase, class-II 1 324 1.9E-95
SUPERFAMILY SSF51569 Aldolase - - 1 323 9.38E-106
NCBIfam TIGR01521 JCVI: fructose-bisphosphate aldolase class II IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype 1 344 0.0
CDD cd00947 TBP_aldolase_IIB IPR000771 Fructose-bisphosphate aldolase, class-II 1 322 0.0
FunFam G3DSA:3.20.20.70:FF:000111 Fructose-1,6-bisphosphate aldolase - - 1 340 0.0
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 1 349 0.0
PANTHER PTHR30304 D-TAGATOSE-1,6-BISPHOSPHATE ALDOLASE - - 1 326 6.6E-121
Pfam PF01116 Fructose-bisphosphate aldolase class-II IPR000771 Fructose-bisphosphate aldolase, class-II 1 322 3.2E-92

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.