Pseudomonas putida BIRD-1, PPUBIRD1_4766

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppb03018 RNA degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 207 310 3.9E-27
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 181 2.0E-61
MobiDBLite mobidb-lite consensus disorder prediction - - 380 425 -
FunFam G3DSA:3.40.50.300:FF:000468 ATP-dependent RNA helicase RhlE - - 184 365 5.7E-93
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 45 331 2.03E-71
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 2 167 1.6E-40
PANTHER PTHR47959 ATP-DEPENDENT RNA HELICASE RHLE-RELATED - - 2 489 2.4E-127
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 229 310 2.1E-31
MobiDBLite mobidb-lite consensus disorder prediction - - 345 592 -
CDD cd18787 SF2_C_DEAD - - 190 319 1.31177E-60
MobiDBLite mobidb-lite consensus disorder prediction - - 528 592 -
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 184 375 1.2E-49
CDD cd00268 DEADc - - 1 179 3.67804E-87
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 1 193 2.5E-46
MobiDBLite mobidb-lite consensus disorder prediction - - 479 502 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.