Pseudomonas putida HB3267, B479_02410

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00086 pac_2 IPR001610 PAC motif 754 796 9.6E-7
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 687 794 4.89E-26
SMART SM00052 duf2_2 IPR001633 EAL domain 978 1224 1.4E-113
SMART SM00086 pac_2 IPR001610 PAC motif 509 549 0.015
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 296 423 1.93E-19
Gene3D G3DSA:3.30.450.20 PAS domain - - 677 808 8.7E-35
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 422 547 2.58E-19
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 809 976 1.8E-61
Pfam PF13426 PAS domain IPR000014 PAS domain 571 673 2.3E-8
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 807 964 2.3E-52
CDD cd01948 EAL IPR001633 EAL domain 984 1224 2.85506E-101
Gene3D G3DSA:3.30.450.20 PAS domain - - 547 672 7.4E-21
SMART SM00086 pac_2 IPR001610 PAC motif 385 425 0.36
SMART SM00267 duf1_3 IPR000160 GGDEF domain 796 968 4.6E-70
CDD cd00130 PAS IPR000014 PAS domain 330 422 1.41412E-5
CDD cd00130 PAS IPR000014 PAS domain 447 546 2.30451E-7
CDD cd00130 PAS IPR000014 PAS domain 691 793 5.7099E-11
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 546 672 9.83E-23
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 803 967 2.6E-44
Pfam PF13426 PAS domain IPR000014 PAS domain 693 794 8.7E-14
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 668 1229 0.0
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 979 1233 4.9E-92
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 558 681 1.1E-14
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 435 556 2.6E-12
Gene3D G3DSA:3.40.190.10 - - - 122 216 1.3E-71
CDD cd01007 PBP2_BvgS_HisK_like - - 35 254 5.53301E-80
Pfam PF13426 PAS domain IPR000014 PAS domain 449 548 2.5E-7
SMART SM00091 pas_2 IPR000014 PAS domain 561 628 9.7E-5
SMART SM00091 pas_2 IPR000014 PAS domain 311 379 1.5E-5
Gene3D G3DSA:3.30.450.20 PAS domain - - 320 426 5.3E-20
SMART SM00086 pac_2 IPR001610 PAC motif 634 674 0.0036
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 307 432 3.3E-13
CDD cd00130 PAS IPR000014 PAS domain 570 671 1.37572E-7
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 978 1236 8.1E-100
CDD cd01949 GGDEF IPR000160 GGDEF domain 808 965 2.36691E-67
SMART SM00091 pas_2 IPR000014 PAS domain 682 748 1.4E-6
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 812 968 3.22E-52
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 38 255 1.63E-50
Gene3D G3DSA:3.40.190.10 - - - 27 253 1.3E-71
Gene3D G3DSA:3.30.450.20 PAS domain - - 427 546 3.5E-21
Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 38 255 1.1E-40
Pfam PF08447 PAS fold IPR013655 PAS fold-3 336 411 1.4E-9
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 686 803 6.6E-19
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 802 969 1.2E-42
SMART SM00062 AABind_6 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 37 257 1.4E-33
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 983 1231 9.42E-88
Pfam PF00563 EAL domain IPR001633 EAL domain 985 1219 3.1E-74
SMART SM00091 pas_2 IPR000014 PAS domain 437 504 7.0E-6

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.