Pseudomonas putida HB3267, B479_03760
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppuh01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppuh01120 | Microbial metabolism in diverse environments | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppuh01110 | Biosynthesis of secondary metabolites | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppuh01230 | Biosynthesis of amino acids | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppuh00750 | Vitamin B6 metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppuh00260 | Glycine, serine and threonine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.40.50.1100 | - | IPR036052 | Tryptophan synthase beta chain-like, PALP domain superfamily | 90 | 415 | 1.4E-85 |
| PANTHER | PTHR42690 | THREONINE SYNTHASE FAMILY MEMBER | - | - | 1 | 409 | 3.1E-99 |
| Pfam | PF14821 | Threonine synthase N terminus | IPR029144 | Threonine synthase, N-terminal | 2 | 80 | 3.4E-26 |
| Pfam | PF00291 | Pyridoxal-phosphate dependent enzyme | IPR001926 | Tryptophan synthase beta chain-like, PALP domain | 92 | 344 | 1.5E-24 |
| SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | IPR036052 | Tryptophan synthase beta chain-like, PALP domain superfamily | 1 | 423 | 5.09E-110 |
| Gene3D | G3DSA:3.40.50.1100 | - | IPR036052 | Tryptophan synthase beta chain-like, PALP domain superfamily | 108 | 221 | 1.4E-85 |
| Gene3D | G3DSA:3.90.1380.10 | - | IPR037158 | Threonine synthase, N-terminal domain superfamily | 1 | 86 | 2.1E-26 |
| CDD | cd01560 | Thr-synth_2 | - | - | 2 | 458 | 0.0 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.