Pseudomonas putida HB3267, B479_25040

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0031167 rRNA methylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43542
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF53335
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008168 methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43542
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 11 200 5.5E-64
CDD cd02440 AdoMet_MTases - - 64 141 5.07324E-14
PIRSF PIRSF004553 Methylase_YhhF IPR004398 RNA methyltransferase, RsmD 20 200 6.2E-53
Pfam PF03602 Conserved hypothetical protein 95 - - 21 198 1.2E-61
PANTHER PTHR43542 METHYLTRANSFERASE IPR004398 RNA methyltransferase, RsmD 14 199 3.0E-48
SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 21 198 6.15E-52
NCBIfam TIGR00095 JCVI: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD IPR004398 RNA methyltransferase, RsmD 16 199 5.8E-57

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.