Pseudomonas syringae pv. syringae B728a, Psyr_0224 (rpmB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0005840 | ribosome |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00009
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006412 | translation |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00009
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0003735 | structural constituent of ribosome |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.30.170.40
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | psb03010 | Ribosome | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:2.30.170.40 | Ribosomal protein L28/L24 | IPR037147 | Large ribosomal subunit protein bL28 superfamily | 2 | 77 | 3.7E-34 |
| NCBIfam | TIGR00009 | JCVI: 50S ribosomal protein L28 | IPR001383 | Large ribosomal subunit protein bL28, bacterial-type | 1 | 58 | 8.0E-29 |
| PANTHER | PTHR13528 | 39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL | IPR026569 | Large ribosomal subunit protein bL28 | 1 | 69 | 2.3E-19 |
| SUPERFAMILY | SSF143800 | L28p-like | IPR034704 | Large ribosomal subunit protein bL28/bL31-like superfamily | 1 | 75 | 2.16E-30 |
| Hamap | MF_00373 | 50S ribosomal protein L28 [rpmB]. | IPR001383 | Large ribosomal subunit protein bL28, bacterial-type | 1 | 67 | 21.86727 |
| FunFam | G3DSA:2.30.170.40:FF:000001 | 50S ribosomal protein L28 | - | - | 2 | 77 | 3.7E-42 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 1 | 20 | - |
| Pfam | PF00830 | Ribosomal L28 family | IPR026569 | Large ribosomal subunit protein bL28 | 3 | 61 | 1.5E-27 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.