Pseudomonas syringae pv. syringae B728a, Psyr_0521

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009244 lipopolysaccharide core region biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02193
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008920 lipopolysaccharide heptosyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02193
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016757 transferase activity, transferring glycosyl groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd03789
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psb00540 Lipopolysaccharide biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psb01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.50.2000 Glycogen Phosphorylase B; - - 167 350 1.2E-40
SUPERFAMILY SSF53756 UDP-Glycosyltransferase/glycogen phosphorylase - - 1 348 1.49E-82
FunFam G3DSA:3.40.50.2000:FF:000106 Lipopolysaccharide heptosyltransferase 1 - - 164 317 3.8E-63
CDD cd03789 GT9_LPS_heptosyltransferase IPR002201 Glycosyl transferase, family 9 2 344 8.3004E-66
Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) IPR002201 Glycosyl transferase, family 9 75 314 9.8E-75
PANTHER PTHR30160 TETRAACYLDISACCHARIDE 4'-KINASE-RELATED - - 1 350 8.3E-67
NCBIfam TIGR02193 JCVI: lipopolysaccharide heptosyltransferase I IPR011908 Lipopolysaccharide heptosyltransferase I 2 297 2.2E-115
Gene3D G3DSA:3.40.50.2000 Glycogen Phosphorylase B; - - 1 162 5.1E-47

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.