Pseudomonas syringae pv. syringae B728a, Psyr_0653

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00552
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd01108
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00552
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0045893 positive regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd01108
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005507 copper ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd01108
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
ProSiteProfiles PS50937 MerR-type HTH domain profile. IPR000551 MerR-type HTH domain 1 69 35.964
SUPERFAMILY SSF46955 IPR009061 Putative DNA-binding domain superfamily 1 126 2.09E-40
Gene3D G3DSA:1.10.1660.10 1 125 2.3E-38
PRINTS PR00040 MerR bacterial regulatory protein HTH signature IPR000551 MerR-type HTH domain 37 57 8.7E-10
TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator IPR011789 Cu(I)-responsive transcriptional regulator 1 126 1.4E-55
SMART SM00422 IPR000551 MerR-type HTH domain 1 70 4.2E-32
PRINTS PR00040 MerR bacterial regulatory protein HTH signature IPR000551 MerR-type HTH domain 2 13 8.7E-10
ProSitePatterns PS00552 MerR-type HTH domain signature. IPR000551 MerR-type HTH domain 4 26 -
CDD cd01108 HTH_CueR IPR011789 Cu(I)-responsive transcriptional regulator 1 127 1.16014E-77
PRINTS PR00040 MerR bacterial regulatory protein HTH signature IPR000551 MerR-type HTH domain 13 26 8.7E-10
Pfam PF09278 MerR, DNA binding IPR015358 Transcription regulator MerR, DNA binding 44 108 4.5E-22
Coils Coil 81 111 -
Pfam PF00376 MerR family regulatory protein IPR000551 MerR-type HTH domain 2 39 1.8E-15

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.