Pseudomonas syringae pv. syringae B728a, Psyr_0863
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | psb01120 | Microbial metabolism in diverse environments | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57783 | Zinc beta-ribbon | - | - | 13 | 46 | 5.78E-15 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | - | - | 54 | 124 | 8.3E-36 |
| Pfam | PF08274 | PhnA Zinc-Ribbon | IPR013987 | Protein YjdM, N-terminal | 13 | 42 | 3.4E-16 |
| FunFam | G3DSA:2.30.30.40:FF:000013 | Alkylphosphonate utilization protein PhnA | - | - | 55 | 124 | 1.5E-40 |
| NCBIfam | TIGR00686 | JCVI: zinc ribbon domain-containing protein YjdM | IPR004624 | Protein YjdM | 13 | 123 | 7.4E-49 |
| PANTHER | PTHR30305 | UNCHARACTERIZED | - | - | 17 | 123 | 2.9E-16 |
| Pfam | PF03831 | PhnA domain | IPR013988 | Protein YjdM, C-terminal | 57 | 124 | 6.0E-33 |
| SUPERFAMILY | SSF82057 | Prokaryotic SH3-related domain | - | - | 53 | 124 | 1.56E-28 |
| FunFam | G3DSA:2.20.25.10:FF:000003 | Alkylphosphonate utilization protein PhnA | - | - | 11 | 53 | 1.7E-21 |
| Gene3D | G3DSA:2.20.25.10 | - | - | - | 12 | 52 | 2.6E-20 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.