Pseudomonas syringae pv. syringae B728a, Psyr_3696 (rumA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11061
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008173 RNA methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR11061
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01010
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF53335
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 28 450 61.525471
SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 85 448 1.17E-74
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 17 97 4.5E-20
Gene3D G3DSA:2.40.50.1070 - - - 145 282 1.4E-107
FunFam G3DSA:3.40.50.150:FF:000009 23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD - - 275 444 3.0E-54
Pfam PF01938 TRAM domain IPR002792 TRAM domain 24 75 1.4E-7
Pfam PF05958 tRNA (Uracil-5-)-methyltransferase IPR010280 (Uracil-5)-methyltransferase family 279 447 1.5E-24
CDD cd02440 AdoMet_MTases - - 307 402 2.11003E-10
Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 98 444 1.4E-107
NCBIfam TIGR00479 JCVI: 23S rRNA (uracil-5-)-methyltransferase RlmD - - 272 442 1.6E-57
PANTHER PTHR11061 RNA M5U METHYLTRANSFERASE IPR010280 (Uracil-5)-methyltransferase family 272 450 2.9E-81
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 15 75 6.28E-11

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.