Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Molecular Function | GO:0003910 | DNA ligase (ATP) activity |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.3260.10
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006310 | DNA recombination |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.3260.10
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006281 | DNA repair |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.3260.10
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.3260.10
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0005524 | ATP binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
|
Database | Xref | Pathway | Version | Evidence | PMID |
---|---|---|---|---|---|
KEGG | psb03430 | Mismatch repair | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | psb03410 | Base excision repair | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | psb03420 | Nucleotide excision repair | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | psb03030 | DNA replication | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
NCBIfam | TIGR04120 | JCVI: cisplatin damage response ATP-dependent DNA ligase | IPR026333 | ATP-dependent DNA ligase, PP_1105 family | 2 | 566 | 0.0 |
Gene3D | G3DSA:3.30.470.30 | DNA ligase/mRNA capping enzyme | - | - | 209 | 435 | 2.0E-39 |
CDD | cd07972 | OBF_DNA_ligase_Arch_LigB | - | - | 440 | 563 | 2.61549E-60 |
Pfam | PF01068 | ATP dependent DNA ligase domain | IPR012310 | DNA ligase, ATP-dependent, central | 214 | 435 | 2.2E-21 |
Gene3D | G3DSA:1.10.3260.10 | - | IPR036599 | DNA ligase, ATP-dependent, N-terminal domain superfamily | 2 | 184 | 6.4E-9 |
Pfam | PF04675 | DNA ligase N terminus | IPR012308 | DNA ligase, ATP-dependent, N-terminal | 2 | 161 | 1.0E-15 |
Gene3D | G3DSA:2.40.50.140 | - | IPR012340 | Nucleic acid-binding, OB-fold | 439 | 567 | 1.3E-28 |
Pfam | PF04679 | ATP dependent DNA ligase C terminal region | IPR012309 | DNA ligase, ATP-dependent, C-terminal | 456 | 551 | 1.1E-9 |
SUPERFAMILY | SSF56091 | DNA ligase/mRNA capping enzyme, catalytic domain | - | - | 208 | 435 | 2.73E-51 |
SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | IPR012340 | Nucleic acid-binding, OB-fold | 440 | 566 | 1.01E-28 |
CDD | cd07897 | Adenylation_DNA_ligase_Bac1 | - | - | 207 | 439 | 1.55082E-107 |
PANTHER | PTHR45674 | DNA LIGASE 1/3 FAMILY MEMBER | - | - | 2 | 566 | 1.2E-54 |