Pseudomonas syringae pv. syringae B728a, Psyr_3880

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08494
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08494
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF08494 DEAD/H associated IPR013701 DEAD/H associated 606 792 8.7E-49
Pfam PF19306 Helicase Lhr winged helix domain IPR045628 Helicase Lhr-like, winged helix domain 399 548 5.6E-58
Coils Coil Coil - - 751 778 -
PANTHER PTHR47962 ATP-DEPENDENT HELICASE LHR-RELATED-RELATED - - 4 808 0.0
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 276 357 1.4E-6
CDD cd18796 SF2_C_LHR - - 224 371 8.74731E-65
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 26 371 8.26E-43
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 21 202 5.2E-22
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 248 404 2.5E-19
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 15 230 6.4E-22
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 14 216 4.7E-39
PIRSF PIRSF037307 Lhr-like_helic IPR017170 Lhr-like ATP-dependent RNA helicase, predicted 4 824 0.0
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 255 358 4.2E-11
NCBIfam TIGR04121 JCVI: ligase-associated DNA damage response DEXH box helicase IPR026362 DEXH box helicase, DNA ligase-associated 9 821 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.