Pseudomonas syringae pv. syringae B728a, Psyr_4642

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.450.20 PAS domain - - 129 253 1.4E-19
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 560 814 1.6E-96
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 127 253 2.62E-21
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 383 550 5.0E-41
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 387 552 1.4E-58
Coils Coil Coil - - 553 574 -
SMART SM00086 pac_2 IPR001610 PAC motif 335 377 1.8E-6
Pfam PF13426 PAS domain IPR000014 PAS domain 152 254 2.5E-7
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 14 128 2.79E-16
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 559 819 6.6E-103
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 140 262 5.7E-16
Pfam PF13426 PAS domain IPR000014 PAS domain 28 129 7.3E-9
CDD cd01948 EAL IPR001633 EAL domain 565 805 9.59243E-117
CDD cd00130 PAS IPR000014 PAS domain 28 127 4.2498E-9
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 247 808 0.0
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 564 810 1.01E-89
SMART SM00091 pas_2 IPR000014 PAS domain 18 85 3.4E-5
CDD cd01949 GGDEF IPR000160 GGDEF domain 389 546 1.26233E-64
PIRSF PIRSF005925 Dos IPR012226 Diguanylate cyclase/phosphodiesterase 376 817 0.0
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 393 549 1.73E-50
SMART SM00086 pac_2 IPR001610 PAC motif 90 130 0.21
Pfam PF13426 PAS domain IPR000014 PAS domain 274 375 6.4E-14
PIRSF PIRSF005925 Dos IPR012226 Diguanylate cyclase/phosphodiesterase 252 387 9.1E-13
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 16 137 1.0E-12
Gene3D G3DSA:3.30.450.20 PAS domain - - 9 128 7.1E-18
PIRSF PIRSF005925 Dos IPR012226 Diguanylate cyclase/phosphodiesterase 130 266 23.0
SMART SM00086 pac_2 IPR001610 PAC motif 215 255 3.5
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 384 547 5.5E-41
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 388 545 1.3E-50
SMART SM00091 pas_2 IPR000014 PAS domain 263 329 5.9E-6
Pfam PF00563 EAL domain IPR001633 EAL domain 565 800 2.6E-76
SMART SM00091 pas_2 IPR000014 PAS domain 142 209 8.1E-5
PIRSF PIRSF005925 Dos IPR012226 Diguanylate cyclase/phosphodiesterase 10 141 21.0
Gene3D G3DSA:3.30.450.20 PAS domain - - 260 386 1.2E-35
SMART SM00267 duf1_3 IPR000160 GGDEF domain 377 549 4.9E-72
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 267 384 2.2E-18
CDD cd00130 PAS IPR000014 PAS domain 151 252 2.21175E-7
SMART SM00052 duf2_2 IPR001633 EAL domain 559 805 6.1E-117
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 268 375 4.01E-27
CDD cd00130 PAS IPR000014 PAS domain 272 374 2.18278E-10

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.