Pseudomonas aeruginosa UCBPP-PA14, PA14_23340 (ihfB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00988
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:4.10.520.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00988
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005694 chromosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00988
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0030527 structural constituent of chromatin
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other UCBPP-PA14 genes in this class
Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class
DNA replication, recombination, modification and repair Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR01727 Prokaryotic integration host factor signature IPR000119 Histone-like DNA-binding protein 41 56 6.8E-19
FunFam G3DSA:4.10.520.10:FF:000003 Integration host factor subunit beta - - 1 94 3.2E-50
PANTHER PTHR33175 DNA-BINDING PROTEIN HU IPR000119 Histone-like DNA-binding protein 1 90 1.2E-27
Gene3D G3DSA:4.10.520.10 - IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily 1 92 1.9E-30
SUPERFAMILY SSF47729 IHF-like DNA-binding proteins IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily 1 92 3.68E-31
Pfam PF00216 Bacterial DNA-binding protein IPR000119 Histone-like DNA-binding protein 1 91 9.4E-29
NCBIfam TIGR00988 JCVI: integration host factor subunit beta IPR005685 Integration host factor, beta subunit 1 94 7.2E-54
PRINTS PR01727 Prokaryotic integration host factor signature IPR000119 Histone-like DNA-binding protein 59 72 6.8E-19
Hamap MF_00381 Integration host factor subunit beta [ihfB]. IPR005685 Integration host factor, beta subunit 1 94 29.812973
CDD cd13836 IHF_B - - 1 89 5.97196E-47
SMART SM00411 bhlneu IPR000119 Histone-like DNA-binding protein 1 91 7.5E-45
PRINTS PR01727 Prokaryotic integration host factor signature IPR000119 Histone-like DNA-binding protein 75 89 6.8E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.