Pseudomonas aeruginosa UCBPP-PA14, PA14_23480

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 56 75 2.7
PANTHER PTHR21180 ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY DOMAIN-CONTAINING PROTEIN 1 - - 29 108 2.9E-18
NCBIfam TIGR00426 JCVI: competence protein ComEA helix-hairpin-helix repeat region IPR004509 Competence protein ComEA, helix-hairpin-helix domain 44 108 2.7E-20
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 86 105 30.0
Gene3D G3DSA:1.10.150.320 Photosystem II 12 kDa extrinsic protein - - 28 106 6.5E-17
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 34 107 2.22E-24
Pfam PF12836 Helix-hairpin-helix motif - - 44 106 6.9E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.