Pseudomonas aeruginosa UCBPP-PA14, PA14_36760

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00559
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006303 double-strand break repair via nonhomologous end joining
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00559
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau03450 Non-homologous end-joining 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction - - 260 293 -
PANTHER PTHR41251 NON-HOMOLOGOUS END JOINING PROTEIN KU IPR009187 Non-homologous end joining protein Ku, prokaryotic type 1 291 4.3E-104
Gene3D G3DSA:2.40.290.10 - IPR016194 SPOC-like, C-terminal domain superfamily 3 181 9.7E-18
MobiDBLite mobidb-lite consensus disorder prediction - - 260 279 -
Pfam PF02735 Ku70/Ku80 beta-barrel domain IPR006164 Ku70/Ku80 beta-barrel domain 12 193 7.4E-34
SMART SM00559 ku_4 IPR006164 Ku70/Ku80 beta-barrel domain 53 181 6.4E-49
SUPERFAMILY SSF100939 SPOC domain-like IPR016194 SPOC-like, C-terminal domain superfamily 2 259 2.75E-51
Hamap MF_01875 Non-homologous end joining protein Ku [ku]. IPR009187 Non-homologous end joining protein Ku, prokaryotic type 2 260 32.088684
FunFam G3DSA:2.40.290.10:FF:000004 Non-homologous end joining protein Ku - - 4 178 3.8E-63
PIRSF PIRSF006493 Prok_Ku IPR009187 Non-homologous end joining protein Ku, prokaryotic type 1 292 7.8E-106
CDD cd00789 KU_like IPR009187 Non-homologous end joining protein Ku, prokaryotic type 3 260 4.99381E-122
NCBIfam TIGR02772 JCVI: Ku protein IPR009187 Non-homologous end joining protein Ku, prokaryotic type 2 262 5.8E-103

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.