Pseudomonas aeruginosa UCBPP-PA14, PA14_56620

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:1900231 regulation of single-species biofilm formation on inanimate substrate
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA4354
 ECO:0000249
sequence similarity evidence used in automatic assertion		 22820840
Molecular Function GO:0000976 transcription regulatory region sequence-specific DNA binding
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA4354
 ECO:0000249
sequence similarity evidence used in automatic assertion		 22820840
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00418
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00418
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 3 97 1.15E-20
CDD cd00090 HTH_ARSR IPR011991 ArsR-like helix-turn-helix domain 9 98 8.8029E-15
PANTHER PTHR33154 TRANSCRIPTIONAL REGULATOR, ARSR FAMILY - - 6 98 2.2E-20
SMART SM00418 arsrmega2 IPR001845 HTH ArsR-type DNA-binding domain 7 98 9.8E-12
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 3 99 4.5E-25
NCBIfam NF033788 NCBIFAM: metalloregulator ArsR/SmtB family transcription factor - - 6 91 2.1E-15
Pfam PF12840 Helix-turn-helix domain - - 6 78 2.5E-16

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.