Pseudomonas aeruginosa PA7, PSPA7_6300 (np20)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006882 cellular zinc ion homeostasis
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5499
 ECO:0000249
sequence similarity evidence used in automatic assertion		 24086521
Biological Process GO:0045892 negative regulation of transcription, DNA-templated
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5499
 ECO:0000249
sequence similarity evidence used in automatic assertion		 24086521
Biological Process GO:1900376 regulation of secondary metabolite biosynthetic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5499
 ECO:0000249
sequence similarity evidence used in automatic assertion		 12426334
Biological Process GO:0071294 cellular response to zinc ion
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5499
 ECO:0000249
sequence similarity evidence used in automatic assertion		 24086521
Biological Process GO:0071579 regulation of zinc ion transport
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5499
 ECO:0000249
sequence similarity evidence used in automatic assertion		 24086521
Molecular Function GO:0003677 DNA binding
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5499
 ECO:0000249
sequence similarity evidence used in automatic assertion		 24086521
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR33202
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR33202
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PA7 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pap02024 Quorum sensing 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.1490.190 - IPR043135 Ferric-uptake regulator, C-terminal domain 106 165 3.0E-14
FunFam G3DSA:3.30.1490.190:FF:000007 Fur family transcriptional regulator - - 106 164 2.8E-25
FunFam G3DSA:1.10.10.10:FF:000137 Zinc uptake transcriptional repressor - - 17 105 5.8E-38
Pfam PF01475 Ferric uptake regulator family IPR002481 Ferric-uptake regulator 36 154 2.9E-11
CDD cd07153 Fur_like IPR002481 Ferric-uptake regulator 43 158 1.27585E-22
PANTHER PTHR33202 ZINC UPTAKE REGULATION PROTEIN IPR002481 Ferric-uptake regulator 19 166 8.8E-25
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 29 159 3.56E-29
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 17 105 1.7E-25

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.