Pseudomonas aeruginosa M18, PAM18_0661 (rpoC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006351 transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00623
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00623
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00623
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other M18 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG paf01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG paf03020 RNA polymerase 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG paf00230 Purine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG paf00240 Pyrimidine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF04998 RNA polymerase Rpb1, domain 5 IPR007081 RNA polymerase Rpb1, domain 5 766 1316 2.8E-77
SUPERFAMILY SSF64484 beta and beta-prime subunits of DNA dependent RNA-polymerase - - 16 1363 0.0
FunFam G3DSA:4.10.860.120:FF:000001 DNA-directed RNA polymerase subunit beta - - 12 132 5.5E-69
Gene3D G3DSA:1.10.132.30 - IPR038120 RNA polymerase Rpb1, funnel domain superfamily 638 790 7.7E-68
PANTHER PTHR19376 DNA-DIRECTED RNA POLYMERASE IPR045867 DNA-directed RNA polymerase, subunit beta-prime 23 1363 0.0
Pfam PF04997 RNA polymerase Rpb1, domain 1 IPR007080 RNA polymerase Rpb1, domain 1 16 342 2.6E-90
FunFam G3DSA:1.10.150.390:FF:000002 DNA-directed RNA polymerase subunit beta'' - - 1316 1376 1.3E-31
Gene3D G3DSA:1.10.274.100 RNA polymerase Rpb1, domain 3 IPR042102 RNA polymerase Rpb1, domain 3 superfamily 489 637 4.3E-44
MobiDBLite mobidb-lite consensus disorder prediction - - 1367 1399 -
Gene3D G3DSA:4.10.860.120 RNA polymerase II, clamp domain IPR044893 RNA polymerase Rpb1, clamp domain superfamily 8 142 1.5E-24
Gene3D G3DSA:2.40.50.100 - - - 1151 1215 2.7E-68
FunFam G3DSA:1.10.132.30:FF:000003 DNA-directed RNA polymerase subunit beta - - 638 790 1.1E-76
Gene3D G3DSA:2.40.50.100 - - - 1023 1126 3.9E-33
Pfam PF04983 RNA polymerase Rpb1, domain 3 IPR007066 RNA polymerase Rpb1, domain 3 489 643 5.7E-30
Coils Coil Coil - - 191 211 -
Gene3D G3DSA:2.40.50.100 - - - 948 1022 1.1E-24
CDD cd01609 RNAP_beta'_N - - 15 813 0.0
Gene3D G3DSA:1.10.150.390 - - - 1316 1376 6.1E-27
Pfam PF05000 RNA polymerase Rpb1, domain 4 IPR007083 RNA polymerase Rpb1, domain 4 674 763 3.4E-20
Pfam PF00623 RNA polymerase Rpb1, domain 2 IPR000722 RNA polymerase, alpha subunit 344 381 2.4E-7
Pfam PF00623 RNA polymerase Rpb1, domain 2 IPR000722 RNA polymerase, alpha subunit 389 485 2.7E-28
CDD cd02655 RNAP_beta'_C - - 907 1363 8.21481E-83
Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. IPR012754 DNA-directed RNA polymerase, subunit beta-prime, bacterial type 14 1387 19.055861
Gene3D G3DSA:2.40.40.20 - - - 332 486 5.6E-48
NCBIfam TIGR02386 JCVI: DNA-directed RNA polymerase subunit beta' IPR012754 DNA-directed RNA polymerase, subunit beta-prime, bacterial type 19 1366 0.0
SMART SM00663 rpolaneu7 IPR006592 RNA polymerase, N-terminal 235 514 0.0
Gene3D G3DSA:1.10.40.90 - - - 370 413 2.4E-21
FunFam G3DSA:1.10.40.90:FF:000001 DNA-directed RNA polymerase subunit beta - - 372 413 3.5E-22
Gene3D G3DSA:1.10.1790.20 - - - 1135 1314 2.7E-68

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.