Pseudomonas aeruginosa M18, PAM18_3902 (rhlC)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | paf02025 | Biofilm formation - Pseudomonas aeruginosa | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
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| KEGG | paf02024 | Quorum sensing | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | IPR029044 | Nucleotide-diphospho-sugar transferases | 17 | 219 | 5.7E-14 |
| Pfam | PF13641 | Glycosyltransferase like family 2 | - | - | 8 | 217 | 1.6E-6 |
| NCBIfam | TIGR01556 | JCVI: rhamnosyltransferase | IPR006446 | Rhamnosyltransferase | 11 | 291 | 4.3E-118 |
| CDD | cd02526 | GT2_RfbF_like | - | - | 8 | 246 | 8.94871E-86 |
| PANTHER | PTHR43179 | RHAMNOSYLTRANSFERASE WBBL | - | - | 2 | 291 | 4.9E-26 |
| FunFam | G3DSA:3.90.550.10:FF:000270 | Rhamnosyltransferase 2 | - | - | 17 | 219 | 0.0 |
| SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | IPR029044 | Nucleotide-diphospho-sugar transferases | 9 | 280 | 5.25E-23 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.