Pseudomonas aeruginosa DK2, PADK2_14915

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00559
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006303 double-strand break repair via nonhomologous end joining
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00559
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Hypothetical, unclassified, unknown Other DK2 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pdk03450 Non-homologous end-joining 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR41251 NON-HOMOLOGOUS END JOINING PROTEIN KU IPR009187 Non-homologous end joining protein Ku, prokaryotic type 1 291 6.6E-105
MobiDBLite mobidb-lite consensus disorder prediction - - 260 293 -
PIRSF PIRSF006493 Prok_Ku IPR009187 Non-homologous end joining protein Ku, prokaryotic type 1 292 3.3E-106
CDD cd00789 KU_like IPR009187 Non-homologous end joining protein Ku, prokaryotic type 3 260 1.0917E-122
Gene3D G3DSA:2.40.290.10 - IPR016194 SPOC-like, C-terminal domain superfamily 3 181 9.4E-18
FunFam G3DSA:2.40.290.10:FF:000004 Non-homologous end joining protein Ku - - 4 179 5.2E-63
Pfam PF02735 Ku70/Ku80 beta-barrel domain IPR006164 Ku70/Ku80 beta-barrel domain 12 193 7.9E-34
NCBIfam TIGR02772 JCVI: Ku protein IPR009187 Non-homologous end joining protein Ku, prokaryotic type 2 262 2.5E-103
MobiDBLite mobidb-lite consensus disorder prediction - - 260 279 -
Hamap MF_01875 Non-homologous end joining protein Ku [ku]. IPR009187 Non-homologous end joining protein Ku, prokaryotic type 2 260 32.197948
SMART SM00559 ku_4 IPR006164 Ku70/Ku80 beta-barrel domain 53 181 6.6E-49
SUPERFAMILY SSF100939 SPOC domain-like IPR016194 SPOC-like, C-terminal domain superfamily 2 259 1.2E-51

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.