Pseudomonas aeruginosa DK2, PADK2_21250

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0015822 ornithine transport
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA0890
 ECO:0000249
sequence similarity evidence used in automatic assertion		 9791103
Biological Process GO:1902023 L-arginine transport
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA0890
 ECO:0000249
sequence similarity evidence used in automatic assertion		 9791103
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01726
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01726
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0071705 nitrogen compound transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01726
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06261
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0043190 ATP-binding cassette (ABC) transporter complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01726
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transport of small molecules Other DK2 genes in this class
Membrane proteins Other DK2 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pdk02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.3720.10 - IPR035906 MetI-like superfamily 1 224 1.0E-50
CDD cd06261 TM_PBP2 IPR000515 ABC transporter type 1, transmembrane domain MetI-like 37 213 5.18044E-15
FunFam G3DSA:1.10.3720.10:FF:000012 Histidine ABC transporter permease HisM - - 3 225 2.6E-101
SUPERFAMILY SSF161098 MetI-like IPR035906 MetI-like superfamily 13 215 2.09E-40
Pfam PF00528 Binding-protein-dependent transport system inner membrane component IPR000515 ABC transporter type 1, transmembrane domain MetI-like 33 223 1.2E-15
PANTHER PTHR30450 ABC TRANSPORTER PERMEASE - - 4 222 2.0E-62
NCBIfam TIGR01726 JCVI: ABC transporter permease subunit, His/Glu/Gln/Arg/opine family, N-terminal region IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain 12 117 1.8E-21

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.