Pseudomonas aeruginosa RP73, M062_02150

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0042255 ribosome assembly
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00968
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003724 RNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00968
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other RP73 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG prp03018 RNA degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 215 6.6E-76
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 24 102 2.92E-5
MobiDBLite mobidb-lite consensus disorder prediction - - 386 639 -
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 263 344 1.6E-32
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 218 437 1.6E-50
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 25 199 4.1E-45
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 241 344 3.2E-26
FunFam G3DSA:3.40.50.300:FF:000468 ATP-dependent RNA helicase RhlE - - 218 401 6.2E-94
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 80 365 3.4E-73
PANTHER PTHR47959 ATP-DEPENDENT RNA HELICASE RHLE-RELATED - - 2 572 0.0
Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. IPR028622 ATP-dependent RNA helicase RhlE 1 566 50.626034
CDD cd18787 SF2_C_DEAD - - 224 353 5.56397E-60
CDD cd00268 DEADc - - 12 213 1.50766E-99
MobiDBLite mobidb-lite consensus disorder prediction - - 467 482 -
MobiDBLite mobidb-lite consensus disorder prediction - - 397 420 -
MobiDBLite mobidb-lite consensus disorder prediction - - 605 639 -
FunFam G3DSA:3.40.50.300:FF:000108 ATP-dependent RNA helicase RhlE - - 1 215 5.9E-91
MobiDBLite mobidb-lite consensus disorder prediction - - 521 542 -
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 20 227 8.3E-62

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.