Pseudomonas aeruginosa RP73, M062_06860

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 158 207 8.78E-7
Pfam PF08448 PAS fold IPR013656 PAS fold-4 40 147 1.7E-18
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 214 260 1.25E-13
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 27 146 1.74E-13
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 225 240 1.6E-7
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 240 256 1.6E-7
Gene3D G3DSA:3.30.450.20 PAS domain - - 23 153 1.6E-19
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 181 257 3.3E-23
CDD cd00130 PAS IPR000014 PAS domain 42 147 1.01603E-4
Gene3D G3DSA:1.10.10.60 - - - 159 264 4.4E-30
PANTHER PTHR46796 HTH-TYPE TRANSCRIPTIONAL ACTIVATOR RHAS-RELATED - - 64 258 2.6E-28
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 174 256 8.0E-26

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.