Pseudomonas entomophila L48, PSEEN0005

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02954
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 20 118 1.2E-9
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 396 413 1.5E-5
CDD cd00009 AAA - - 137 298 1.04631E-23
Pfam PF08448 PAS fold IPR013656 PAS fold-4 17 125 1.7E-18
PANTHER PTHR32071 TRANSCRIPTIONAL REGULATORY PROTEIN - - 127 432 3.6E-112
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 413 433 1.5E-5
Gene3D G3DSA:1.10.8.60 - - - 307 381 7.8E-21
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 156 299 1.5E-10
Gene3D G3DSA:1.10.10.60 - - - 392 433 3.5E-8
CDD cd00130 PAS IPR000014 PAS domain 22 118 1.32406E-4
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 136 302 7.1E-63
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 347 432 5.73E-11
Pfam PF02954 Bacterial regulatory protein, Fis family IPR002197 DNA binding HTH domain, Fis-type 398 429 6.9E-9
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 136 376 1.86E-67
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 125 306 9.8E-63
Gene3D G3DSA:3.30.450.20 PAS domain - - 21 124 5.6E-8

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.