Pseudomonas entomophila L48, PSEEN1363 (rumA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008173 RNA methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF05958
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01010
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF05958
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01938 TRAM domain IPR002792 TRAM domain 25 78 2.4E-6
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 29 86 2.23E-10
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 18 99 6.0E-19
FunFam G3DSA:3.40.50.150:FF:000009 23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD - - 274 446 2.4E-56
CDD cd02440 AdoMet_MTases - - 309 404 3.53207E-11
SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 88 450 2.43E-79
Pfam PF05958 tRNA (Uracil-5-)-methyltransferase IPR010280 (Uracil-5)-methyltransferase family 112 448 8.3E-25
MobiDBLite mobidb-lite consensus disorder prediction - - 1 23 -
Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 100 446 6.3E-112
PANTHER PTHR11061 RNA M5U METHYLTRANSFERASE IPR010280 (Uracil-5)-methyltransferase family 274 450 3.6E-84
NCBIfam TIGR00479 JCVI: 23S rRNA (uracil-5-)-methyltransferase RlmD - - 274 444 5.1E-60
Gene3D G3DSA:2.40.50.1070 - - - 147 284 6.3E-112
Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 30 452 62.749382

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.