Pseudomonas entomophila L48, PSEEN1559

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.10.50.30
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0070063 RNA polymerase binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF006092
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0032784 regulation of DNA-templated transcription, elongation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.10.50.30
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term IPR001437 Transcription elongation factor, GreA/GreB, C-terminal 85 156 1.3E-6
SUPERFAMILY SSF54534 FKBP-like - - 84 159 9.81E-9
Gene3D G3DSA:3.10.50.30 - IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily 78 160 2.4E-8
PIRSF PIRSF006092 GreA_GreB IPR023459 Transcription elongation factor GreA/GreB family 4 160 2.2E-9

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.