Pseudomonas stutzeri A1501, PST_0778 (rpoC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006351 transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04997
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04997
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04997
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psa03020 RNA polymerase 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psa00240 Pyrimidine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psa01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psa00230 Purine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.150.390 - - - 1316 1377 3.4E-27
Pfam PF05000 RNA polymerase Rpb1, domain 4 IPR007083 RNA polymerase Rpb1, domain 4 674 763 1.4E-20
Pfam PF04998 RNA polymerase Rpb1, domain 5 IPR007081 RNA polymerase Rpb1, domain 5 766 1316 4.3E-79
Gene3D G3DSA:2.40.50.100 - - - 1151 1215 3.4E-68
Gene3D G3DSA:1.10.132.30 - IPR038120 RNA polymerase Rpb1, funnel domain superfamily 638 790 4.7E-68
Gene3D G3DSA:4.10.860.120 RNA polymerase II, clamp domain IPR044893 RNA polymerase Rpb1, clamp domain superfamily 8 142 7.1E-23
Gene3D G3DSA:2.40.40.20 - - - 332 486 5.6E-48
FunFam G3DSA:1.10.132.30:FF:000003 DNA-directed RNA polymerase subunit beta - - 638 790 4.5E-77
FunFam G3DSA:1.10.40.90:FF:000001 DNA-directed RNA polymerase subunit beta - - 372 413 5.4E-22
Gene3D G3DSA:1.10.1790.20 - - - 1135 1314 3.4E-68
Gene3D G3DSA:1.10.40.90 - - - 370 413 7.2E-21
FunFam G3DSA:4.10.860.120:FF:000001 DNA-directed RNA polymerase subunit beta - - 12 132 3.3E-68
Gene3D G3DSA:1.10.274.100 RNA polymerase Rpb1, domain 3 IPR042102 RNA polymerase Rpb1, domain 3 superfamily 489 637 1.1E-43
CDD cd02655 RNAP_beta'_C - - 909 1363 1.40565E-81
SUPERFAMILY SSF64484 beta and beta-prime subunits of DNA dependent RNA-polymerase - - 16 1363 0.0
SMART SM00663 rpolaneu7 IPR006592 RNA polymerase, N-terminal 235 514 0.0
Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. IPR012754 DNA-directed RNA polymerase, subunit beta-prime, bacterial type 14 1377 18.976727
CDD cd01609 RNAP_beta'_N - - 15 813 0.0
Gene3D G3DSA:2.40.50.100 - - - 1023 1126 1.4E-33
PANTHER PTHR19376 DNA-DIRECTED RNA POLYMERASE IPR045867 DNA-directed RNA polymerase, subunit beta-prime 24 1363 0.0
FunFam G3DSA:1.10.150.390:FF:000002 DNA-directed RNA polymerase subunit beta'' - - 1316 1377 1.7E-32
Pfam PF04997 RNA polymerase Rpb1, domain 1 IPR007080 RNA polymerase Rpb1, domain 1 16 342 1.1E-87
NCBIfam TIGR02386 JCVI: DNA-directed RNA polymerase subunit beta' IPR012754 DNA-directed RNA polymerase, subunit beta-prime, bacterial type 19 1366 0.0
Coils Coil Coil - - 1275 1295 -
Pfam PF04983 RNA polymerase Rpb1, domain 3 IPR007066 RNA polymerase Rpb1, domain 3 489 643 5.7E-30
Pfam PF00623 RNA polymerase Rpb1, domain 2 IPR000722 RNA polymerase, alpha subunit 344 387 1.1E-7
Gene3D G3DSA:2.40.50.100 - - - 949 1022 5.1E-25
Pfam PF00623 RNA polymerase Rpb1, domain 2 IPR000722 RNA polymerase, alpha subunit 388 485 2.3E-28

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.