Pseudomonas stutzeri ATCC 17588 = LMG 11199, PSTAB_0017
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0008725 | DNA-3-methyladenine glycosylase activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF03352
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006284 | base-excision repair |
Inferred from Sequence Model
Term mapped from: InterPro:PF03352
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0003824 | catalytic activity |
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006281 | DNA repair |
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | psz03410 | Base excision repair | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR00624 | JCVI: DNA-3-methyladenine glycosylase I | IPR004597 | DNA-3-methyladenine glycosylase I | 3 | 177 | 9.0E-83 |
| PANTHER | PTHR30037 | DNA-3-METHYLADENINE GLYCOSYLASE 1 | - | - | 3 | 180 | 1.7E-68 |
| Pfam | PF03352 | Methyladenine glycosylase | IPR005019 | Methyladenine glycosylase | 6 | 177 | 4.7E-70 |
| FunFam | G3DSA:1.10.340.30:FF:000009 | DNA-3-methyladenine glycosylase I | - | - | 1 | 182 | 7.6E-88 |
| Gene3D | G3DSA:1.10.340.30 | Hypothetical protein; domain 2 | - | - | 1 | 181 | 1.8E-74 |
| SUPERFAMILY | SSF48150 | DNA-glycosylase | IPR011257 | DNA glycosylase | 1 | 181 | 1.96E-73 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.