Pseudomonas stutzeri ATCC 17588 = LMG 11199, PSTAB_0239

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00086 pac_2 IPR001610 PAC motif 467 509 0.0015
SMART SM00091 pas_2 IPR000014 PAS domain 395 461 2.2E-7
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 267 392 1.6E-7
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 525 683 2.04E-45
Gene3D G3DSA:3.30.450.20 PAS domain - - 388 522 8.8E-31
SMART SM00091 pas_2 IPR000014 PAS domain 270 337 3.8
CDD cd01949 GGDEF IPR000160 GGDEF domain 521 679 1.08398E-55
Coils Coil Coil - - 212 232 -
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 692 943 6.2E-95
CDD cd01948 EAL IPR001633 EAL domain 697 937 3.63182E-114
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 393 516 5.0E-20
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 692 943 2.2E-104
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 518 679 8.9E-34
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 523 686 4.2E-52
CDD cd00130 PAS IPR000014 PAS domain 279 384 7.0364E-5
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 696 942 1.2E-91
Pfam PF13426 PAS domain IPR000014 PAS domain 406 507 5.4E-14
Pfam PF08447 PAS fold IPR013655 PAS fold-3 303 380 1.1E-13
Pfam PF00563 EAL domain IPR001633 EAL domain 697 932 1.6E-76
SMART SM00267 duf1_3 IPR000160 GGDEF domain 509 681 1.4E-58
SMART SM00052 duf2_2 IPR001633 EAL domain 691 937 3.6E-121
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 276 388 2.62E-15
Gene3D G3DSA:3.30.450.20 PAS domain - - 263 383 1.9E-26
CDD cd00130 PAS IPR000014 PAS domain 404 506 1.63079E-8
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 373 942 0.0
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 520 676 4.2E-43
SMART SM00086 pac_2 IPR001610 PAC motif 344 387 6.0E-4
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 400 507 2.27E-22

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.