Pseudomonas stutzeri ATCC 17588 = LMG 11199, PSTAB_3901 (ttgA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0022857 | transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0055085 | transmembrane transport |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | psz01503 | Cationic antimicrobial peptide (CAMP) resistance | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | psz01501 | beta-Lactam resistance | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR01730 | JCVI: efflux RND transporter periplasmic adaptor subunit | IPR006143 | RND efflux pump, membrane fusion protein | 37 | 359 | 1.5E-80 |
| Pfam | PF16576 | Barrel-sandwich domain of CusB or HlyD membrane-fusion | IPR032317 | RND efflux pump, membrane fusion protein, barrel-sandwich domain | 61 | 277 | 4.8E-18 |
| FunFam | G3DSA:2.40.420.20:FF:000001 | Efflux RND transporter periplasmic adaptor subunit | - | - | 268 | 360 | 8.1E-30 |
| Gene3D | G3DSA:2.40.50.100 | - | - | - | 61 | 191 | 9.0E-66 |
| Coils | Coil | Coil | - | - | 133 | 153 | - |
| Gene3D | G3DSA:2.40.30.170 | - | - | - | 55 | 267 | 9.0E-66 |
| Gene3D | G3DSA:1.10.287.470 | Helix hairpin bin | - | - | 96 | 155 | 9.0E-66 |
| Pfam | PF00529 | Cation efflux system protein CusB domain 1 | IPR043602 | Cation efflux system protein CusB, domain 1 | 284 | 345 | 1.3E-6 |
| Gene3D | G3DSA:2.40.420.20 | - | - | - | 268 | 360 | 1.3E-24 |
| SUPERFAMILY | SSF111369 | HlyD-like secretion proteins | - | - | 49 | 284 | 3.92E-93 |
| PANTHER | PTHR30158 | ACRA/E-RELATED COMPONENT OF DRUG EFFLUX TRANSPORTER | - | - | 9 | 366 | 2.5E-121 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.