Pseudomonas stutzeri ATCC 17588 = LMG 11199, PSTAB_4159
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0009279 | cell outer membrane |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Molecular Function | GO:0015343 | siderophore transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0038023 | signaling receptor activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0015891 | siderophore transport |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0019867 | outer membrane |
Inferred from Sequence Model
Term mapped from: InterPro:SM00965
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:2.40.170.20 | - | IPR036942 | TonB-dependent receptor-like, beta-barrel domain superfamily | 280 | 829 | 0.0 |
| Pfam | PF00593 | TonB dependent receptor | IPR000531 | TonB-dependent receptor-like, beta-barrel | 376 | 827 | 1.0E-62 |
| Pfam | PF07715 | TonB-dependent Receptor Plug Domain | IPR012910 | TonB-dependent receptor, plug domain | 165 | 269 | 4.3E-20 |
| FunFam | G3DSA:2.40.170.20:FF:000005 | TonB-dependent siderophore receptor | - | - | 280 | 829 | 0.0 |
| SMART | SM00965 | STN_2 | IPR011662 | Secretin/TonB, short N-terminal domain | 69 | 120 | 5.3E-10 |
| FunFam | G3DSA:2.170.130.10:FF:000001 | Catecholate siderophore TonB-dependent receptor | - | - | 147 | 280 | 1.8E-39 |
| PANTHER | PTHR32552 | FERRICHROME IRON RECEPTOR-RELATED | IPR039426 | TonB-dependent receptor-like | 129 | 829 | 0.0 |
| SUPERFAMILY | SSF56935 | Porins | - | - | 123 | 829 | 0.0 |
| Gene3D | G3DSA:3.55.50.30 | - | - | - | 40 | 138 | 4.7E-25 |
| NCBIfam | TIGR01783 | JCVI: TonB-dependent siderophore receptor | IPR010105 | TonB-dependent siderophore receptor | 166 | 829 | 0.0 |
| Pfam | PF07660 | Secretin and TonB N terminus short domain | IPR011662 | Secretin/TonB, short N-terminal domain | 71 | 119 | 5.3E-8 |
| Gene3D | G3DSA:2.170.130.10 | - | IPR037066 | TonB-dependent receptor, plug domain superfamily | 146 | 279 | 3.3E-28 |
| CDD | cd01347 | ligand_gated_channel | - | - | 170 | 829 | 3.19657E-121 |
| Coils | Coil | Coil | - | - | 829 | 829 | - |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.