Pseudomonas stutzeri DSM 4166, PSTAA_1395 (rnd)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006139 nucleobase-containing compound metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01612
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00570
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0033890 ribonuclease D activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01899
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0044237 cellular metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47819
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008408 3'-5' exonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01612
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000166 nucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47819
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47819
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0008033 tRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01899
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.420.10 IPR036397 Ribonuclease H superfamily 3 194 1.3E-61
ProSiteProfiles PS50967 HRDC domain profile. IPR002121 HRDC domain 211 291 19.88
SUPERFAMILY SSF53098 IPR012337 Ribonuclease H-like superfamily 5 210 1.01E-60
CDD cd06142 RNaseD_exo 13 189 2.56326E-75
Pfam PF01612 3'-5' exonuclease IPR002562 3'-5' exonuclease domain 6 172 1.4E-39
SMART SM00474 IPR002562 3'-5' exonuclease domain 5 173 4.9E-41
SUPERFAMILY SSF47819 IPR010997 HRDC-like superfamily 296 372 9.35E-16
SMART SM00341 IPR002121 HRDC domain 211 291 2.6E-10
Gene3D G3DSA:1.10.150.80 305 374 1.6E-6
SUPERFAMILY SSF47819 IPR010997 HRDC-like superfamily 196 301 3.55E-30
Pfam PF00570 HRDC domain IPR002121 HRDC domain 214 281 1.1E-15
Hamap MF_01899 Ribonuclease D [rnd]. IPR006292 Ribonuclease D 5 371 41.632
Gene3D G3DSA:1.10.150.80 196 295 1.1E-25
TIGRFAM TIGR01388 rnd: ribonuclease D IPR006292 Ribonuclease D 7 371 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.