Pseudomonas stutzeri DSM 4166, PSTAA_4318 (coxB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004129 cytochrome-c oxidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR22888
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0020037 heme binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.760.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005507 copper ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00116
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0022900 electron transport chain
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02790
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02866
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009055 electron transfer activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.760.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016491 oxidoreductase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02866
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psr00190 Oxidative phosphorylation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psr01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 85 105 4.6E-38
PANTHER PTHR22888 CYTOCHROME C OXIDASE, SUBUNIT II IPR045187 Cytochrome c/quinol oxidase subunit II 11 250 1.0E-73
Gene3D G3DSA:2.60.40.420 - IPR008972 Cupredoxin 106 243 1.7E-77
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 73 85 4.6E-38
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 198 215 4.6E-38
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 178 198 4.6E-38
SUPERFAMILY SSF81464 Cytochrome c oxidase subunit II-like, transmembrane region IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily 13 103 9.32E-25
Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III IPR009056 Cytochrome c-like domain 268 340 8.8E-13
Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain IPR002429 Cytochrome c oxidase subunit II-like C-terminal 113 232 2.9E-36
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 154 175 4.6E-38
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 216 233 4.6E-38
SUPERFAMILY SSF49503 Cupredoxins IPR008972 Cupredoxin 108 249 1.01E-50
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 107 126 4.6E-38
Gene3D G3DSA:1.10.287.90 - IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily 29 105 1.7E-77
Gene3D G3DSA:1.10.760.10 - IPR036909 Cytochrome c-like domain superfamily 247 369 4.3E-27
NCBIfam TIGR02866 JCVI: cytochrome c oxidase subunit II IPR014222 Cytochrome c oxidase, subunit II 25 243 2.1E-56
Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain IPR011759 Cytochrome C oxidase subunit II, transmembrane domain 15 96 9.6E-14
SUPERFAMILY SSF46626 Cytochrome c IPR036909 Cytochrome c-like domain superfamily 213 351 5.79E-25

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.