Pseudomonas stutzeri CCUG 29243, A458_05490 (ispG)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0016114 terpenoid biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04551
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0044237 cellular metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.20.20.20
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005506 iron ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF004640
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04551
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0008299 isoprenoid biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF004640
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psc00900 Terpenoid backbone biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psc01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psc01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psc01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00612 JCVI: (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type 9 352 0.0
Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type 7 357 35.749886
Gene3D G3DSA:3.20.20.20 - IPR011005 Dihydropteroate synthase-like 1 261 8.6E-108
Pfam PF04551 GcpE protein IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type 13 353 0.0
PANTHER PTHR30454 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type 5 252 0.0
FunFam G3DSA:3.20.20.20:FF:000001 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) - - 1 261 0.0
PIRSF PIRSF004640 IspG IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial 1 363 0.0
SUPERFAMILY SSF56014 Nitrite and sulphite reductase 4Fe-4S domain-like IPR045854 Nitrite and sulphite reductase 4Fe-4S domain-like superfamily 265 353 1.63E-10
Gene3D G3DSA:3.30.413.10 Sulfite Reductase Hemoprotein, domain 1 IPR045854 Nitrite and sulphite reductase 4Fe-4S domain-like superfamily 262 362 3.6E-27
Coils Coil Coil - - 341 361 -
SUPERFAMILY SSF51717 Dihydropteroate synthetase-like IPR011005 Dihydropteroate synthase-like 16 207 8.63E-10

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.