Pseudomonas stutzeri CCUG 29243, A458_20410
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0005515 | protein binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 407 | 514 | 1.4E-20 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 528 | 686 | 1.24134E-53 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 402 | 468 | 2.1E-7 |
| PANTHER | PTHR44757 | DIGUANYLATE CYCLASE DGCP | - | - | 380 | 949 | 0.0 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 269 | 390 | 1.3E-26 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 704 | 944 | 1.46568E-113 |
| Pfam | PF08447 | PAS fold | IPR013655 | PAS fold-3 | 327 | 387 | 1.1E-12 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 277 | 344 | 190.0 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 274 | 399 | 5.9E-8 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 704 | 939 | 4.2E-77 |
| Coils | Coil | Coil | - | - | 251 | 285 | - |
| Coils | Coil | Coil | - | - | 212 | 246 | - |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 525 | 686 | 1.0E-32 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 527 | 683 | 6.7E-42 |
| SMART | SM00086 | pac_2 | IPR001610 | PAC motif | 351 | 394 | 2.3E-7 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 699 | 950 | 3.6E-104 |
| FunFam | G3DSA:3.20.20.450:FF:000001 | Cyclic di-GMP phosphodiesterase yahA | - | - | 699 | 950 | 4.0E-95 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 289 | 391 | 7.03851E-4 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 532 | 690 | 1.01E-44 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 530 | 693 | 3.3E-50 |
| SMART | SM00086 | pac_2 | IPR001610 | PAC motif | 474 | 516 | 0.0071 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 400 | 523 | 2.7E-18 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 395 | 529 | 8.9E-29 |
| Pfam | PF13426 | PAS domain | IPR000014 | PAS domain | 413 | 514 | 1.0E-12 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 264 | 392 | 3.14E-14 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 698 | 944 | 3.3E-121 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 516 | 688 | 7.8E-57 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 703 | 949 | 5.75E-92 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 411 | 513 | 8.59928E-8 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.