Pseudomonas stutzeri DSM 10701, PSJM300_06610

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0050660 flavin adenine dinucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02771
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02771
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psj00280 Valine, leucine and isoleucine degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psj01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psj01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psj00640 Propanoate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psj00410 beta-Alanine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psj01212 Fatty acid metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psj00071 Fatty acid degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psj01200 Carbon metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psj01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF56645 Acyl-CoA dehydrogenase NM domain-like IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily 1 231 8.9E-63
SUPERFAMILY SSF47203 Acyl-CoA dehydrogenase C-terminal domain-like IPR036250 Acyl-CoA dehydrogenase-like, C-terminal 232 385 6.77E-44
PIRSF PIRSF016578 PIGM - - 6 97 4.0E-4
FunFam G3DSA:1.10.540.10:FF:000013 Acyl-CoA dehydrogenase - - 1 117 2.1E-54
FunFam G3DSA:1.20.140.10:FF:000012 Acyl-CoA dehydrogenase fadE12 - - 237 383 4.5E-74
PIRSF PIRSF016578 PIGM - - 236 384 1.3E-7
Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain IPR009075 Acyl-CoA dehydrogenase/oxidase, C-terminal 232 365 2.9E-36
Gene3D G3DSA:1.20.140.10 - - - 237 383 3.1E-38
Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal 6 116 3.4E-26
FunFam G3DSA:2.40.110.10:FF:000014 Probable acyl-CoA dehydrogenase - - 120 236 3.0E-59
Pfam PF02770 Acyl-CoA dehydrogenase, middle domain IPR006091 Acyl-CoA oxidase/dehydrogenase, middle domain 121 219 7.9E-21
PANTHER PTHR48083 MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED - - 6 382 2.3E-89
PIRSF PIRSF016578 PIGM - - 128 195 0.37
Gene3D G3DSA:2.40.110.10 - IPR046373 Acyl-CoA oxidase/dehydrogenase, middle domain superfamily 121 236 1.2E-31
Gene3D G3DSA:1.10.540.10 - IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily 1 117 1.3E-30

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.