Pseudomonas stutzeri DSM 10701, PSJM300_17015

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0036211 protein modification process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00121
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00121
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00978
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
MetaCyc lipoate biosynthesis and incorporation III (Bacillus) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG psj01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psj00780 Biotin metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc lipoate biosynthesis and incorporation (yeast) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF03099 Biotin/lipoate A/B protein ligase family IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain 83 206 5.8E-23
SUPERFAMILY SSF55681 Class II aaRS and biotin synthetases IPR045864 Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) 73 265 9.32E-61
Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. IPR030855 Bifunctional ligase/repressor BirA 3 315 32.540726
Gene3D G3DSA:2.30.30.100 - - - 269 320 2.8E-13
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 59 3.1E-20
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 4 56 5.69E-11
Gene3D G3DSA:3.30.930.10 Bira Bifunctional Protein; Domain 2 IPR045864 Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) 63 267 1.0E-60
PANTHER PTHR12835 BIOTIN PROTEIN LIGASE - - 6 303 2.2E-54
SUPERFAMILY SSF50037 C-terminal domain of transcriptional repressors IPR008988 Transcriptional repressor, C-terminal 269 315 5.95E-8
CDD cd16442 BPL IPR004408 Biotin--acetyl-CoA-carboxylase ligase 78 250 1.15422E-67
Pfam PF08279 HTH domain IPR013196 Helix-turn-helix, type 11 3 54 1.0E-11
NCBIfam TIGR00121 JCVI: biotin--[acetyl-CoA-carboxylase] ligase IPR004408 Biotin--acetyl-CoA-carboxylase ligase 79 315 8.8E-57

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.