Pseudomonas stutzeri DSM 10701, PSJM300_17270

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005525 GTP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00157
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003924 GTPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00157
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psj01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psj00730 Thiamine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF03193 RsgA GTPase IPR010914 RsgA GTPase domain 104 277 1.6E-54
Gene3D G3DSA:1.10.40.50 Probable gtpase engc; domain 3 - - 278 342 1.1E-19
Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. IPR004881 Ribosome biogenesis GTPase RsgA 45 342 36.393089
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 45 106 9.42E-5
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 117 338 1.46E-57
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 106 277 3.9E-55
NCBIfam TIGR00157 JCVI: ribosome small subunit-dependent GTPase A IPR004881 Ribosome biogenesis GTPase RsgA 82 334 1.6E-75
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 40 103 5.8E-23
CDD cd01854 YjeQ_EngC IPR004881 Ribosome biogenesis GTPase RsgA 124 335 1.68228E-98
PANTHER PTHR32120 SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA IPR004881 Ribosome biogenesis GTPase RsgA 37 339 5.6E-82

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.