Pseudomonas mendocina NK-01, MDS_0139

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0050304 nitrous-oxide reductase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04244
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005509 calcium ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04244
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.130.10.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005507 copper ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04244
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc nitrate reduction VII (denitrification) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pmk00910 Nitrogen metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc nitrifier denitrification InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF18793 Nitrous oxide reductase propeller repeat 2 IPR041142 Nitrous oxide reductase, propeller repeat 2 167 237 1.7E-32
SUPERFAMILY SSF50974 Nitrous oxide reductase, N-terminal domain IPR011045 Nitrous oxide reductase, N-terminal 57 502 1.96E-128
SUPERFAMILY SSF49503 Cupredoxins IPR008972 Cupredoxin 505 633 9.64E-37
Gene3D G3DSA:2.60.40.420 - IPR008972 Cupredoxin 515 632 7.1E-38
FunFam G3DSA:2.130.10.10:FF:001102 Nitrous-oxide reductase - - 54 513 0.0
Pfam PF18764 Nitrous oxide reductase propeller repeat IPR041114 Nitrous oxide reductase, propeller repeat 1 420 490 4.3E-35
Gene3D G3DSA:2.130.10.10 - IPR015943 WD40/YVTN repeat-like-containing domain superfamily 54 513 0.0
CDD cd04223 N2OR_C IPR034205 Nitrous-oxide reductase, C-terminal 539 633 1.57913E-52
NCBIfam TIGR01409 JCVI: twin-arginine translocation signal domain IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal 14 45 0.0026
PANTHER PTHR42838 CYTOCHROME C OXIDASE SUBUNIT II - - 3 633 0.0
Hamap MF_00716 Nitrous-oxide reductase [nosZ]. IPR023644 Nitrous-oxide reductase 2 633 62.883144
NCBIfam TIGR04244 JCVI: TAT-dependent nitrous-oxide reductase IPR023644 Nitrous-oxide reductase 14 632 0.0
FunFam G3DSA:2.60.40.420:FF:000095 Nitrous-oxide reductase - - 514 633 1.2E-74

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.