Pseudomonas mendocina NK-01, MDS_0215

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.1060.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk00630 Glyoxylate and dicarboxylate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF54862 4Fe-4S ferredoxins - - 17 118 1.88E-20
Pfam PF02754 Cysteine-rich domain IPR004017 Cysteine-rich domain 303 386 9.2E-13
PIRSF PIRSF000139 Glc_ox_4Fe-4S IPR012257 Glycolate oxidase, iron-sulphur subunit 5 405 5.0E-127
Pfam PF02754 Cysteine-rich domain IPR004017 Cysteine-rich domain 170 255 7.1E-13
Gene3D G3DSA:1.10.1060.10 - IPR009051 Alpha-helical ferredoxin 2 106 7.1E-16
PANTHER PTHR32479 GLYCOLATE OXIDASE IRON-SULFUR SUBUNIT - - 2 404 7.1E-100
Pfam PF13183 4Fe-4S dicluster domain IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain 22 89 4.8E-12
FunFam G3DSA:1.10.1060.10:FF:000012 Glycolate oxidase iron-sulfur subunit - - 2 109 1.5E-51

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.