Pseudomonas mendocina NK-01, MDS_0475

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003724 RNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00968
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0042255 ribosome assembly
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00968
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk03018 RNA degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 263 344 7.9E-32
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 79 365 3.09E-71
MobiDBLite mobidb-lite consensus disorder prediction - - 512 551 -
FunFam G3DSA:3.40.50.300:FF:000468 ATP-dependent RNA helicase RhlE - - 218 399 3.3E-93
Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. IPR028622 ATP-dependent RNA helicase RhlE 1 541 49.180355
MobiDBLite mobidb-lite consensus disorder prediction - - 566 606 -
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 238 344 1.5E-26
PANTHER PTHR47959 ATP-DEPENDENT RNA HELICASE RHLE-RELATED - - 2 551 0.0
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 215 3.8E-78
FunFam G3DSA:3.40.50.300:FF:000108 ATP-dependent RNA helicase RhlE - - 1 215 3.0E-92
MobiDBLite mobidb-lite consensus disorder prediction - - 386 632 -
MobiDBLite mobidb-lite consensus disorder prediction - - 486 500 -
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 218 412 1.4E-50
MobiDBLite mobidb-lite consensus disorder prediction - - 386 440 -
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 25 201 8.4E-46
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 24 100 1.27E-6
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 20 227 3.1E-62
CDD cd00268 DEADc - - 12 213 1.60503E-102
CDD cd18787 SF2_C_DEAD - - 224 353 5.67303E-60

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.