Pseudomonas mendocina NK-01, MDS_0506
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF00440
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| PANTHER | PTHR47506 | TRANSCRIPTIONAL REGULATORY PROTEIN | - | - | 1 | 177 | 6.0E-31 |
| Pfam | PF13977 | BetI-type transcriptional repressor, C-terminal | IPR039538 | BetI-type transcriptional repressor, C-terminal | 98 | 171 | 6.3E-7 |
| Gene3D | G3DSA:1.10.357.10 | Tetracycline Repressor, domain 2 | - | - | 50 | 179 | 3.8E-21 |
| Gene3D | G3DSA:1.10.10.60 | - | - | - | 1 | 49 | 1.6E-17 |
| SUPERFAMILY | SSF48498 | Tetracyclin repressor-like, C-terminal domain | IPR036271 | Tetracyclin repressor-like, C-terminal domain superfamily | 63 | 176 | 7.19E-20 |
| Pfam | PF00440 | Bacterial regulatory proteins, tetR family | IPR001647 | DNA-binding HTH domain, TetR-type | 1 | 41 | 2.0E-9 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | IPR009057 | Homeobox-like domain superfamily | 1 | 61 | 1.23E-11 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.