Pseudomonas mendocina NK-01, MDS_0699

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005525 GTP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd01854
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003924 GTPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd01854
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk00730 Thiamine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00157 JCVI: ribosome small subunit-dependent GTPase A IPR004881 Ribosome biogenesis GTPase RsgA 82 335 2.0E-75
Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. IPR004881 Ribosome biogenesis GTPase RsgA 45 342 36.119911
Gene3D G3DSA:1.10.40.50 Probable gtpase engc; domain 3 - - 279 342 8.9E-19
Pfam PF03193 RsgA GTPase IPR010914 RsgA GTPase domain 104 277 5.5E-56
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 40 103 2.1E-22
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 106 277 9.7E-55
PANTHER PTHR32120 SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA IPR004881 Ribosome biogenesis GTPase RsgA 40 338 1.8E-79
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 117 336 3.13E-56
CDD cd01854 YjeQ_EngC IPR004881 Ribosome biogenesis GTPase RsgA 124 336 5.95123E-97

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.