Pseudomonas mendocina NK-01, MDS_1304

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02075
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004520 endodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02075
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02075
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.420.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC IPR002176 Crossover junction endodeoxyribonuclease RuvC 4 150 1.1E-63
PANTHER PTHR30194 CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC IPR002176 Crossover junction endodeoxyribonuclease RuvC 2 158 1.1E-59
Gene3D G3DSA:3.30.420.10 - IPR036397 Ribonuclease H superfamily 2 158 4.8E-51
PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature IPR002176 Crossover junction endodeoxyribonuclease RuvC 107 126 1.1E-38
PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature IPR002176 Crossover junction endodeoxyribonuclease RuvC 5 18 1.1E-38
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 3 156 9.86E-51
Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. IPR002176 Crossover junction endodeoxyribonuclease RuvC 2 153 46.837074
PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature IPR002176 Crossover junction endodeoxyribonuclease RuvC 61 77 1.1E-38
PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature IPR002176 Crossover junction endodeoxyribonuclease RuvC 83 99 1.1E-38
CDD cd16962 RuvC IPR002176 Crossover junction endodeoxyribonuclease RuvC 4 153 2.67545E-76
PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature IPR002176 Crossover junction endodeoxyribonuclease RuvC 138 150 1.1E-38
FunFam G3DSA:3.30.420.10:FF:000002 Crossover junction endodeoxyribonuclease RuvC - - 2 158 1.0E-62
NCBIfam TIGR00228 JCVI: crossover junction endodeoxyribonuclease RuvC IPR002176 Crossover junction endodeoxyribonuclease RuvC 4 155 6.0E-59

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.