Pseudomonas mendocina NK-01, MDS_1961

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0030527 structural constituent of chromatin
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00411
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:4.10.520.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00988
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00988
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005694 chromosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00988
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR33175 DNA-BINDING PROTEIN HU IPR000119 Histone-like DNA-binding protein 1 90 3.6E-27
NCBIfam TIGR00988 JCVI: integration host factor subunit beta IPR005685 Integration host factor, beta subunit 1 94 3.6E-53
PRINTS PR01727 Prokaryotic integration host factor signature IPR000119 Histone-like DNA-binding protein 41 56 1.5E-18
FunFam G3DSA:4.10.520.10:FF:000003 Integration host factor subunit beta - - 1 94 1.4E-49
Pfam PF00216 Bacterial DNA-binding protein IPR000119 Histone-like DNA-binding protein 1 91 2.7E-28
Gene3D G3DSA:4.10.520.10 - IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily 1 92 7.5E-30
CDD cd13836 IHF_B - - 1 89 2.27786E-46
SUPERFAMILY SSF47729 IHF-like DNA-binding proteins IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily 1 92 1.05E-30
Hamap MF_00381 Integration host factor subunit beta [ihfB]. IPR005685 Integration host factor, beta subunit 1 94 29.620972
PRINTS PR01727 Prokaryotic integration host factor signature IPR000119 Histone-like DNA-binding protein 75 89 1.5E-18
SMART SM00411 bhlneu IPR000119 Histone-like DNA-binding protein 1 91 3.0E-43
PRINTS PR01727 Prokaryotic integration host factor signature IPR000119 Histone-like DNA-binding protein 59 72 1.5E-18

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.