Pseudomonas mendocina NK-01, MDS_2143

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd03259
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0043190 ATP-binding cassette (ABC) transporter complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08402
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08402
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015408 ATPase-coupled ferric iron transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd03259
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08402
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08402
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006826 iron ion transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd03259
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR43875 MALTODEXTRIN IMPORT ATP-BINDING PROTEIN MSMX IPR047641 ABC transporter, ATP-binding protein MalK/UgpC-like 1 356 9.1E-96
FunFam G3DSA:3.40.50.300:FF:000042 Maltose/maltodextrin ABC transporter, ATP-binding protein - - 1 245 6.5E-85
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 4 250 2.16E-62
Pfam PF00005 ABC transporter IPR003439 ABC transporter-like, ATP-binding domain 32 168 3.3E-21
SUPERFAMILY SSF50331 MOP-like IPR008995 Molybdate/tungstate binding, C-terminal 243 358 2.02E-18
CDD cd03259 ABC_Carb_Solutes_like IPR015853 ABC transporter, ferric cation import, FbpC 4 223 1.7435E-82
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 288 348 3.3E-12
Pfam PF08402 TOBE domain IPR013611 Transport-associated OB, type 2 285 353 1.5E-8
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 245 1.6E-60
Gene3D G3DSA:2.40.50.100 - - - 246 355 3.3E-12
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 34 226 8.7E-8

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.